STRINGSTRING
ycf38 protein (Gloeobacter violaceus) - STRING interaction network
"ycf38" - Hypothetical protein in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycf38Hypothetical protein (294 aa)    
Predicted Functional Partners:
glr2167
ABC transporter ATP-binding protein (335 aa)
 
  0.977
glr3472
ABC transporter ATP-binding protein (313 aa)
 
  0.821
glr2165
Hypothetical protein (311 aa)
 
          0.811
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group (305 aa)
              0.791
gll0675
Hypothetical protein (306 aa)
 
  0.754
glr3421
ABC transporter ATP-binding protein (246 aa)
   
  0.682
glr3104
ABC transporter ATP-binding protein (247 aa)
   
  0.682
glr2015
ABC transporter ATP-binding component (637 aa)
   
  0.682
gll4210
ABC transporter ATP-binding protein (324 aa)
   
  0.682
glr0782
Hypothetical protein (105 aa)
   
          0.672
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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