STRINGSTRING
opcA protein (Gloeobacter violaceus) - STRING interaction network
"opcA" - Hypothetical protein in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opcAHypothetical protein (375 aa)    
Predicted Functional Partners:
glr3178
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone (512 aa)
 
   
  0.939
glr3180
6-phosphogluconolactonase (242 aa)
   
   
  0.885
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (73 aa)
   
          0.577
gll1597
transaldolase/EF-hand domain-containing protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (389 aa)
 
     
  0.568
gll0842
Hypothetical protein (150 aa)
   
          0.547
glr0411
Hypothetical protein (127 aa)
   
          0.545
gsr3177
Hypothetical protein (93 aa)
 
          0.537
glr2814
Hypothetical protein (139 aa)
   
          0.536
gll3437
Hypothetical protein (192 aa)
   
          0.512
gll2737
Hypothetical protein (707 aa)
   
          0.502
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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