STRINGSTRING
shc protein (Gloeobacter violaceus) - STRING interaction network
"shc" - Squalene-hopene cyclase in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shcSqualene-hopene cyclase (637 aa)    
Predicted Functional Partners:
glr4058
Farnesyl-diphosphate farnesyltransferase (363 aa)
 
 
  0.992
gll4056
Hypothetical protein (398 aa)
 
      0.945
glr1748
Hypothetical protein (339 aa)
 
          0.860
glr1747
Dihydrokaempferol 4-reductase (337 aa)
 
          0.853
crtE
Geranylgeranyl pyrophosphate synthase (295 aa)
 
   
  0.771
glr2450
Hypothetical protein (337 aa)
   
      0.767
glr4051
Hypothetical protein (221 aa)
   
          0.743
gll4156
Dihydroflavonol-4-reductase (338 aa)
 
          0.731
glr3090
Gamma-tocopherol methyltransferase (281 aa)
     
 
  0.699
pys
Phytoene synthase (317 aa)
   
   
  0.682
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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