STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_3479PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: ava:Ava_5055 binding-protein dependent transport system inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component. (247 aa)    
Predicted Functional Partners:
Chro_1355
PFAM: Bacterial extracellular solute-binding protein; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059:IPR001188:IPR017909:IPR006061; KEGG: ana:all5043 polyamine-binding protein of polyamine ABC transporter; PFAM: extracellular solute-binding protein family 1; SPTR: Polyamine-binding protein of polyamine ABC transporter.
 
 0.998
Chro_1354
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: ava:Ava_2301 binding-protein dependent transport system inner membrane protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein.
 
0.994
Chro_1969
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: jan:Jann_3074 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: RC215.
 
0.994
Chro_0958
Binding-protein-dependent transport systems inner membrane component; COGs: COG1176 ABC-type spermidine/putrescine transport system permease component I; InterPro IPR000515; KEGG: azl:AZL_b05100 spermidine/putrescine transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein, putative.
  
 0.989
Chro_0276
PFAM: ABC transporter; TOBE domain; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR013611:IPR003593:IPR017871; KEGG: prw:PsycPRwf_1061 putrescine/spermidine ABC transporter ATPase protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; SPTR: Spermidine/putrescine ABC transporter ATPase subunit.
 
 0.977
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.977
Chro_0536
PFAM: Bacterial extracellular solute-binding protein; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059:IPR001188; KEGG: aba:Acid345_1540 ABC spermidine/putrescine transporter, periplasmic ligand binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: ABC spermidine/putrescine transporter, periplasmic ligand binding protein; manually curated.
  
 0.938
Chro_2960
PFAM: Bacterial extracellular solute-binding protein; COGs: COG0687 Spermidine/putrescine-binding periplasmic protein; InterPro IPR006059:IPR001188; KEGG: ava:Ava_3062 periplasmic polyamine-binding protein of ABC transporter; PFAM: extracellular solute-binding protein family 1; SPTR: Periplasmic polyamine-binding protein of ABC transporter.
  
 0.918
Chro_1968
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1177 ABC-type spermidine/putrescine transport system permease component II; InterPro IPR000515; KEGG: jan:Jann_3073 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: RC216; manually curated.
  
  
 
0.909
Chro_0961
PFAM: ABC transporter; TOBE domain; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003439:IPR013611:IPR017871:IPR003593; KEGG: sno:Snov_0103 ABC transporter related protein; PFAM: ABC transporter related; Transport-associated OB domain-containing protein; SMART: AAA ATPase; SPTR: TOBE domain family.
  
 0.881
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.