STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_4119Hypothetical protein; KEGG: amr:AM1_C0018 RND family efflux transporter MFP subunit; SPTR: Putative uncharacterized protein. (434 aa)    
Predicted Functional Partners:
Chro_1996
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: npu:Npun_F6385 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
 
 0.576
Chro_0817
PFAM: Spermine/spermidine synthase; COGs: COG0421 Spermidine synthase; InterPro IPR001045; KEGG: rrs:RoseRS_1363 spermine synthase; PFAM: Spermine synthase; SPTR: Spermine synthase.
  
     0.550
Chro_0789
KEGG: sco:SCO7170 secreted sugar hydrolase; SPTR: Secreted sugar hydrolase.
  
     0.498
Chro_0540
ChaB family protein; PFAM: ChaB; InterPro IPR009317; KEGG: npu:Npun_R3257 hypothetical protein; PFAM: ChaB family protein; SPTR: Putative uncharacterized protein.
  
     0.491
Chro_3559
PFAM: Chlorophyll A-B binding protein; KEGG: ava:Ava_B0155 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.486
Chro_2538
Methyl-accepting chemotaxis sensory transducer with Cache sensor; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089:IPR003660:IPR004010; KEGG: cyc:PCC7424_1959 methyl-accepting chemotaxis sensory transducer; PFAM: Cache domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis sensory transducer.
  
     0.416
Chro_2102
PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR017871:IPR003439:IPR017940:IPR005074:IPR 001140:IPR003593; KEGG: ana:alr5147 ABC transporter ATP-binding protein; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Peptidase, C39 family.
  
 
 0.405
Chro_2117
KEGG: rmr:Rmar_2247 hypothetical protein; SPTR: Similar to Nter part of tr|Q3VXK8|Q3VXK8_9ACTO Hypothetical protein.
  
     0.400
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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