STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PV09_0538960S ribosomal protein L5. (302 aa)    
Predicted Functional Partners:
PV09_08885
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.999
PV09_08816
40S ribosomal protein S19.
   
 
 0.999
PV09_07634
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.999
PV09_07676
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 
 0.999
PV09_07503
Uncharacterized protein.
   
 0.999
PV09_07175
Uncharacterized protein.
  
 0.999
PV09_05759
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
PV09_05163
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.999
PV09_04018
40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.999
PV09_04220
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 
 0.999
Your Current Organism:
Verruconis gallopava
NCBI taxonomy Id: 253628
Other names: ATCC 16027, CBS 437.64, CDC 45-492-62, Dactylaria gallopava, MUCL 6683, Ochroconis gallopava, Scolecobasidium gallopavum, V. gallopava, Verruconis gallopava (W.B. Cooke) Samerpitak & de Hoog, 2014
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