STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001549985_01747Unannotated protein. (464 aa)    
Predicted Functional Partners:
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.753
Myrod_0900
Unannotated protein.
    
 0.741
Myrod_1683
Unannotated protein.
    
 0.741
Myrod_0976
Unannotated protein.
  
 
   0.649
Myrod_2959
Unannotated protein.
    
 
 0.607
Myrod_1244
Unannotated protein.
  
 
  0.607
Myrod_1844
Unannotated protein.
  
     0.572
Myrod_3689
Unannotated protein.
  
     0.552
Myrod_2210
Unannotated protein.
    
   0.547
Myrod_2025
Unannotated protein.
 
   0.532
Your Current Organism:
Myroides odoratus
NCBI taxonomy Id: 256
Other names: ATCC 4651, CCUG 7321, CIP 103105, DSM 2801, Flavobacterium odoratum, IAM 14199, IFO 14945, JCM 7458, M. odoratus, NBRC 14945, NCTC 11036
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.