STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DIP0026Putative transposase (partial); Similar to Streptococcus mutans transposase (fragment) TR:Q9ZHF4 (EMBL:AF065413) (75 aa) fasta scores: E(): 3.5e-11, 47.22% id in 72 aa. (77 aa)    
Predicted Functional Partners:
DIP1518
Putative insertion element DNA-binding protein; Similar to Streptococcus pneumoniae hypothetical 20.7 kDa protein TR:Q9KK22 (EMBL:AF154034) (171 aa) fasta scores: E(): 1.3e-08, 33.75% id in 157 aa, and to Yersinia pestis insertion element IS1661 DNA-binding protein YPO4046 TR:CAC93502 (EMBL:AJ414160) (171 aa) fasta scores: E(): 0.00044, 25.45% id in 165 aa. Identical to DIP0435, DIP1525, DIP1808 and DIP2124.
  
     0.728
DIP1525
Putative phage related integrase (pseudogene); 5x repeat that includes two CDSs: The first encoding for a putative insertion element DNA-binding protein and the second one dowstream for a putative transposase (Similar to Escherichia coli putative transposase InsK for insertion sequence element IS150).
  
     0.728
DIP1808
Putative insertion element DNA-binding protein; Similar to Streptococcus pneumoniae hypothetical 20.7 kDa protein TR:Q9KK22 (EMBL:AF154034) (171 aa) fasta scores: E(): 1.3e-08, 33.75% id in 157 aa and to Yersinia pestis insertion element IS1661 DNA-binding protein YPO3492 TR:CAC92721 (EMBL:AJ414157) (171 aa) fasta scores: E(): 0.00044, 25.45% id in 165 aa. Identical to DIP0435, DIP1518, DIP1525 and DIP2124.
  
     0.728
DIP2124
Putative insertion element DNA-binding protein; Similar to Streptococcus pneumoniae hypothetical 20.7 kDa protein TR:Q9KK22 (EMBL:AF154034) (171 aa) fasta scores: E(): 1.3e-08, 33.75% id in 157 aa, and to Yersinia pestis insertion element IS1661 DNA-binding protein YPO3931 TR:CAC93394 (EMBL:AJ414159) (171 aa) fasta scores: E(): 0.00044, 25.45% id in 165 aa. Identical to DIP0435, DIP1518, DIP1525 and DIP1808.
  
     0.728
DIP0435
Putative insertion element DNA-binding protein; Similar to Streptococcus pneumoniae hypothetical 20.7 kDa protein TR:Q9KK22 (EMBL:AF154034) (171 aa) fasta scores: E(): 1.1e-07, 32.69% id in 156 aa, and to Yersinia pestis insertion element IS1661 DNA-binding protein YPO4046 TR:CAC93502 (EMBL:AJ414160) (171 aa) fasta scores: E(): 0.00096, 26.06% id in 165 aa. Identical to DIP1518, DIP1525, DIP1808 and DIP2124.
  
     0.727
DIP1956
Hypothetical protein; C-terminal regions is similar to Streptococcus agalactiae hypothetical protein TR:Q53639 (EMBL:M22449) (141 aa) fasta scores: E(): 1.3e-06, 32.43% id in 111 aa, and to Marinococcus halophilus putative transposase TR:O06062 (EMBL:U66614) (110 aa) fasta scores: E(): 0.051, 27.18% id in 103 aa.
  
     0.710
gcrY
Conserved hypothetical protein (pseudogene); Pseudogene. Highly similar to Corynebacterium striatum GcrY SWALL:Q9FB53 (EMBL:AF024666) (952 aa) fasta scores: E(): 1e-186, 84.13% id in 517 aa, and to Deinococcus radiodurans DNA modification methyltransferase-related protein DR2267 SWALL:Q9RS60 (EMBL:AE002059) (840 aa) fasta scores: E(): 8.1e-16, 26.91% id in 509 aa. Presents a frameshift at residue 260 with two other CDSs inserted at this point.
  
     0.710
DIP0027
Putative membrane protein; Similar to Mycobacterium tuberculosis putative transmembrane protein Rv0110 or MTV031.04 TR:O53632 (EMBL:AL021926) (249 aa) fasta scores: E(): 1.4e-13, 34.19% id in 193 aa.
       0.535
Your Current Organism:
Corynebacterium diphtheriae
NCBI taxonomy Id: 257309
Other names: C. diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC 13129, Corynebacterium diphtheriae NCTC13129
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