STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadXAlanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (375 aa)    
Predicted Functional Partners:
ddlB
D-alanine--D-alanine ligase B; Cell wall formation.
 
 
 0.947
alr
Alanine racemase, catabolic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 
0.911
BP0103
Probable class IV aminotransferase; Similar to Staphylococcus aureus D-alanine aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta scores: E(): 3.7e-37, 38.849% id in 278 aa, and to Staphylococcus haemolyticus D-alanine aminotransferase Dat SW:DAAA_STAHA (P54694) (282 aa) fasta scores: E(): 1.1e-38, 38.989% id in 277 aa.
    
 0.906
BP0769
Probable aminotransferase; Similar to Staphylococcus aureus D-alanine aminotransferase TR:Q9KWZ6 (EMBL:Y14816) (282 aa) fasta scores: E(): 4.4e-32, 39.130% id in 276 aa, and to Brucella suis hypothetical 32.0 kDa protein TR:CAC67779 (EMBL:AJ305234) (289 aa) fasta scores: E(): 1.5e-47, 48.387% id in 279 aa.
    
 0.906
dltA
Putative D-alanine-D-alanyl carrier protein ligase; Similar to Lactococcus lactis D-alanine activating enzyme DltA TR:Q9CG49 (EMBL:AE006358) (499 aa) fasta scores: E(): 6.8e-40, 32.8% id in 445 aa and to Bacillus subtilis D-alanine-activating enzyme DltA SW:DLTA_BACSU (P39581) (503 aa) fasta scores: E(): 1e-32, 36.99% id in 492 aa.
  
 
 0.905
BP2991
Acyl carrier protein; Similar to in regions to: Escherichia coli O157:H7 EDL933 putative acyl carrier protein z4853 TR:AAG58588 (EMBL:AE005571) (85 aa) fasta scores: E(): 0.0049, 37.03% id in 81 aa and to Bacillus subtilis D-alanyl carrier protein DltC SW:DLTC_BACSU (P39579) (78 aa) fasta scores: E(): 0.14, 30.5% id in 59 aa.
  
 
 0.904
dadA
Similar to Escherichia coli D-amino acid dehydrogenase small subunit DadA or DadR or B1189 or Z1952 or Ecs1684 SW:DADA_ECOLI (P29011) (432 aa) fasta scores: E(): 4.2e-68, 45.14% id in 412 aa, and to Salmonella typhimurium LT2 D-amino acid dehydrogenase subunit DadA TR:AAL20718 (EMBL:AE008780) (432 aa) fasta scores: E(): 3.7e-68, 44.63% id in 410 aa. Also similar to BP2634, 42.079% identity in 404 aa overlap.
  
  
 0.767
mrsA
Phosphoglucomutase/phosphomannomutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
  
 0.711
murE
Possible murein precusor biosynthesis bifunctional protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurF subfamily.
   
 0.635
BP1219
Putative phytoene synthase; Similar to Narcissus pseudonarcissus phytoene synthase precursor Psy SW:PSY_NARPS (P53797) (423 aa) fasta scores: E(): 8.1e-29, 32.72% id in 275 aa, and to Neisseria meningitidis phytoene synthase, putative Nmb1168 or Nmb1130 TR:Q9JRU9 (EMBL:AE002465) (290 aa) fasta scores: E(): 3.7e-54, 51.43% id in 278 aa.
       0.606
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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