STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP1891Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. (321 aa)    
Predicted Functional Partners:
BP1890
Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31.
 
  
 0.951
BP1886
Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica.
 
  
 0.811
BP1892
Conserved hypothetical protein; Similar to Agrobacterium tumefaciens strC58 Agr_l_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 1.7e-09, 29.25% id in 188 aa.
 
     0.756
BP1894
Putative LysR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1265 (+3.50 SD) at aa 16-37, sequence RSFKAAAGKLHLTQAAISGRIA.
 
    0.652
BP2353
Putative inner membrane transport protein; Similar to Bacillus halodurans c4-dicarboxylate transport system Bh0702 TR:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: E(): 1.8e-08, 29.16% id in 144 aa, and to Rhizobium meliloti putative permease protein Bmb20296 TR:CAC48686 (EMBL:AL603642) (172 aa) fasta scores: E(): 4.4e-07, 27.77% id in 144 aa.
 
  
 0.602
BP1918
Putative membrane protein; Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 1.4e-07, 29.6% id in 152 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_3346p TR:AAK90250 (EMBL:AE008369) (183 aa) fasta scores: E(): 2.4e-06, 30.3% id in 165 aa.
 
  
 0.542
BP2669
Putative integral membrane protein; Similar in parts to several e.g. Escherichia coli hypothetical protein YiaM B3577 SW:YIAM_ECOLI (P37674) (157 aa) fasta scores: E(): 3.5e-07, 34.05% id in 138 aa.
 
  
 0.521
BP0069
Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis.
  
     0.500
BP2671
Putative exported protein; Similar to Rhizobium meliloti putative periplasmic binding protein Smc00271 TR:CAC46278 (EMBL:AL591788) (325 aa) fasta scores: E(): 1.2e-29, 34.74% id in 331 aa.
  
   
 0.489
BP0301
Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa.
  
     0.468
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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