node1 | node2 | node1 annotation | node2 annotation | score |
BP0069 | BP1891 | Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis. | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | 0.500 |
BP0069 | BP1918 | Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis. | Putative membrane protein; Similar to Bacillus halodurans C4-dicarboxylate transport system Bh2672 TR:Q9K9H5 (EMBL:AP001516) (183 aa) fasta scores: E(): 1.4e-07, 29.6% id in 152 aa, and to Agrobacterium tumefaciens StrC58 Agr_l_3346p TR:AAK90250 (EMBL:AE008369) (183 aa) fasta scores: E(): 2.4e-06, 30.3% id in 165 aa. | 0.770 |
BP0069 | BP2353 | Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis. | Putative inner membrane transport protein; Similar to Bacillus halodurans c4-dicarboxylate transport system Bh0702 TR:Q9KEZ7 (EMBL:AP001509) (177 aa) fasta scores: E(): 1.8e-08, 29.16% id in 144 aa, and to Rhizobium meliloti putative permease protein Bmb20296 TR:CAC48686 (EMBL:AL603642) (172 aa) fasta scores: E(): 4.4e-07, 27.77% id in 144 aa. | 0.743 |
BP0069 | BP2669 | Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis. | Putative integral membrane protein; Similar in parts to several e.g. Escherichia coli hypothetical protein YiaM B3577 SW:YIAM_ECOLI (P37674) (157 aa) fasta scores: E(): 3.5e-07, 34.05% id in 138 aa. | 0.675 |
BP0301 | BP1886 | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica. | 0.636 |
BP0301 | BP1890 | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | 0.643 |
BP0301 | BP1891 | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | 0.468 |
BP1886 | BP0301 | Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica. | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | 0.636 |
BP1886 | BP1891 | Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica. | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | 0.811 |
BP1886 | BP1894 | Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica. | Putative LysR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1265 (+3.50 SD) at aa 16-37, sequence RSFKAAAGKLHLTQAAISGRIA. | 0.689 |
BP1890 | BP0301 | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | 0.643 |
BP1890 | BP1891 | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | 0.951 |
BP1890 | BP1892 | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | Conserved hypothetical protein; Similar to Agrobacterium tumefaciens strC58 Agr_l_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 1.7e-09, 29.25% id in 188 aa. | 0.769 |
BP1890 | BP1894 | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | Putative LysR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1265 (+3.50 SD) at aa 16-37, sequence RSFKAAAGKLHLTQAAISGRIA. | 0.571 |
BP1891 | BP0069 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Putative membrane protein (pseudogene); (TG)2 in pertussis; (TG)1 in bronchiseptica and parapertussis. | 0.500 |
BP1891 | BP0301 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Similar to Rhodopseudomonas palustris putative ABC transporter substrate binding protein HbaE TR:O07470 (EMBL:U75364) (392 aa) fasta scores: E(): 4.5e-32, 32.741% id in 394 aa, and to Pseudomonas spCA10. putative ABC transporter subunit TR:Q9AQP4 (EMBL:AB047548) (386 aa) fasta scores: E(): 1.7e-50, 41.237% id in 388 aa. | 0.468 |
BP1891 | BP1886 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Conserved hypothetical protein (Pseudogene); CC in pertussis; (AC)CC in parapertussis and bronchiseptica. | 0.811 |
BP1891 | BP1890 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Putative membrane protein (Pseudogene); Signal peptide predicted for BP1889 by SignalP 2.0 HMM (Signal peptide probabilty 0.995) with cleavage site probability 0.485 between residues 30 and 31. | 0.951 |
BP1891 | BP1892 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Conserved hypothetical protein; Similar to Agrobacterium tumefaciens strC58 Agr_l_563p TR:AAK88851 (EMBL:AE008228) (228 aa) fasta scores: E(): 1.7e-09, 29.25% id in 188 aa. | 0.756 |
BP1891 | BP1894 | Putative exported protein; Similar to Ralstonia solanacearum putative signal peptide protein Rsc2510 TR:CAD16217 (EMBL:AL646070) (338 aa) fasta scores: E(): 3.2e-27, 30.15% id in 325 aa, and to Salmonella typhimurium LT2 putative dicarboxylate-binding periplasmic protein Stm3169 TR:AAL22043 (EMBL:AE008845) (327 aa) fasta scores: E(): 3.1e-11, 25.62% id in 281 aa. | Putative LysR-family transcriptional regulator (Pseudogene); Predicted helix-turn-helix motif with score 1265 (+3.50 SD) at aa 16-37, sequence RSFKAAAGKLHLTQAAISGRIA. | 0.652 |