STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
suhBInositol-1-monophosphatase; Similar to Escherichia coli extragenic suppressor protein SuhB or SsyA or b2533 SW:SUHB_ECOLI (P22783) (267 aa) fasta scores: E(): 3.2e-41, 46.33% id in 259 aa, and to Ralstonia solanacearum probable inositol monophosphatase suhB TR:CAD14862 (EMBL:AL646063) (270 aa) fasta scores: E(): 7.4e-54, 55.34% id in 262 aa. Also similar to BP2813, 40.000% identity (43.200% ungapped) in 270 aa overlap. (260 aa)    
Predicted Functional Partners:
BP2813
Inositol monophosphatase-family protein; Similar in the C-terminus to many extragenic suppressor proteins e.g. Escherichia coli extragenic suppressor protein SuhB or SsyA or B2533 SW:SUHB_ECOLI (P22783) (267 aa) fasta scores: E(): 2.4e-20, 41.87% id in 277 aa. Also similar to Vibrio cholerae inositol monophosphate family protein vc0745 TR:Q9KTY5 (EMBL:AE004160) (288 aa) fasta scores: E(): 3.7e-16, 39.24% id in 265 aa. Also similar to BP1902, 40.000% identity (43.200% ungapped) in 270 aa overlap.
  
  
 
0.912
BP2337
Putative phospholipase; Similar to Pseudomonas aeruginosa non-hemolytic phospholipase C precursor PlcN or pa3319 SW:PHLN_PSEAE (P15713) (692 aa) fasta scores: E(): 1.9e-64, 45.1% id in 674 aa.
   
 
  0.903
BP1901
Similar to Pseudomonas aeruginosa probable methyltransferase Pa3817 TR:Q9HXI5 (EMBL:AE004799) (257 aa) fasta scores: E(): 2.5e-30, 41.93% id in 248 aa, and to Azotobacter vinelandii hypothetical 28.2 kDa protein TR:O69217 (EMBL:AF010139) (257 aa) fasta scores: E(): 1e-28, 41.15% id in 243 aa.
  
    0.708
rfaD
ADP-L-glycero-D-manno-heptose-6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.
   
  
 0.657
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.653
waaF
Heptosyltransferase II; Previously sequenced as Bordetella pertussis heptosyltransferase II WaaF TR:O07076 (EMBL:Y13475) (321 aa) fasta scores: E(): 2.3e-125, 100% id in 321 aa, and to Escherichia coli ADP-heptose--LPS heptosyltransferase II RfaF or WaaF or b3620 SW:RFAF_ECOLI (P37692) (348 aa) fasta scores: E(): 3.2e-08, 29.58% id in 311 aa.
   
  
 0.652
bacA
Bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
    0.651
lptD
Putative outer membrane (permeability) protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
      
 0.587
nusA
N utilization substance protein A; Participates in both transcription termination and antitermination.
  
   0.539
BP1903
Putative membrane protein; Similar to Salmonella enterica subspenterica serovar Typhi putative membrane protein Sty1958 TR:CAD05511 (EMBL:AL627272) (519 aa) fasta scores: E(): 1e-110, 59.22% id in 515 aa, and to Escherichia coli hypothetical protein YoaE or B1816 or Z2859 or Ecs2525 SW:YOAE_ECOLI (P76262) (518 aa) fasta scores: E(): 6.4e-109, 57.87% id in 527 aa.
  
    0.534
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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