STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nadX2Putative exported protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate. (267 aa)    
Predicted Functional Partners:
nadX1
Conserved hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
  
 
 
0.917
pyrB-2
Highly similar to Burkholderia cepacia aspartate transcarbamoylase PyrB TR:Q9F9H3 (EMBL:AF192346) (431 aa) fasta scores: E(): 3.2e-131, 77.136% id in 433 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
  
  0.832
BP1923
Probable short chain dehydrogenase; Similar to Brevibacterium spHCU cyclohexanol dehydrogenase ChnA TR:AAK73164 (EMBL:AF257214) (256 aa) fasta scores: E(): 8.4e-30, 42.29% id in 253 aa, and to Streptomyces coelicolor probable oxidoreductase Scf41.15 TR:Q9RJV4 (EMBL:AL117387) (263 aa) fasta scores: E(): 2.4e-31, 45.23% id in 252 aa.
  
    0.826
bioH
Putative hydrolase; Similar to Kurthia sp538-KA26 BioH TR:Q9AJM9 (EMBL:AB045874) (267 aa) fasta scores: E(): 1.4e-15, 30.36% id in 247 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family Cc2797 TR:Q9A4N3 (EMBL:AE005945) (269 aa) fasta scores: E(): 6.7e-19, 36.54% id in 249 aa.
 
    0.820
argG
Similar to Escherichia coli argininosuccinate synthase ArgG SW:ASSY_ECOLI (P22767) (446 aa) fasta scores: E(): 2.9e-140, 80.27% id in 441 aa, and to Pasteurella multocida argininosuccinate synthase PM0813 SW:ASSY_PASMU (P57877) (445 aa) fasta scores: E(): 6.4e-145, 83.48% id in 442 aa; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
   
 
  0.804
BP2398
Putative L-asparaginase; Similar to Vibrio cholerae asparaginase, putative vc2603 TR:Q9KNX7 (EMBL:AE004327) (326 aa) fasta scores: E(): 4.2e-47, 48.75% id in 320 aa, and to Lupinus luteus L-asparaginase SW:ASPG_LUPLU (Q9ZSD6) (325 aa) fasta scores: E(): 9.7e-40, 42.99% id in 307 aa.
   
 
  0.801
BP0053
Outer membrane porin protein precursor (Pseudogene); (T)3 in pertussis; TTCAT in parapertussis and bronchiseptica; Belongs to the aspartate/glutamate racemases family.
     
  0.800
pyrB
Similar to Pseudomonas putida aspartate carbamoyltransferase PyrB SW:PYRB_PSEPU (Q59711) (334 aa) fasta scores: E(): 6.5e-77, 64.821% id in 307 aa, and to Pseudomonas aeruginosa aspartate carbamoyltransferase PyrB or Pa0402 SW:PYRB_PSEAE (Q59653) (334 aa) fasta scores: E(): 2.7e-78, 66.234% id in 308 aa; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.800
aspC
Similar to Rhizobium leguminosarum aspartate aminotransferase AspC or AatA SW:AAT_RHILP (O86459) (400 aa) fasta scores: E(): 3.8e-76, 51.76% id in 396 aa, and to Rhizobium meliloti aspartate aminotransferase A AatA or R02325 or smc01578 SW:AATA_RHIME (Q02635) (400 aa) fasta scores: E(): 4.4e-76, 50.75% id in 396 aa.
     
  0.800
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.800
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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