STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP2291Similar to Pseudomonas putida tartrate dehydrogenase SW:TTUC_PSEPU (Q51945) (364 aa) fasta scores: E(): 2.7e-99, 67.77% id in 360 aa, and to Escherichia coli probable tartrate dehydrogenase YeaU or b1800 SW:TTUC_ECOLI (P76251) (361 aa) fasta scores: E(): 7.8e-104, 69.49% id in 354 aa. (355 aa)    
Predicted Functional Partners:
ilvH
Similar to Escherichia coli acetolactate synthase isozyme III small subunit IlvH or BrnP or B0078 SW:ILVH_ECOLI (P00894) (163 aa) fasta scores: E(): 3.7e-31, 55.828% id in 163 aa, and to Neisseria meningitidis acetolactate synthase isozyme III small subunit IlvH or Nma1765 or Nmb1576 TR:Q9JRF4 (EMBL:AL162757) (163 aa) fasta scores: E(): 8.5e-38, 66.871% id in 163 aa.
  
 0.974
BP0467
Similar to Saccharomyces cerevisiae acetolactate synthase, mitochondrial precursor Ilv2 or Smr1 or Ymr108w or Ym9718.07 SW:ILVB_YEAST (P07342) (687 aa) fasta scores: E(): 1.7e-87, 42.710% id in 583 aa, and to Rhizobium meliloti probable acetolactate synthase isozyme III large subunit protein TR:CAC46693 (EMBL:AL591789) (592 aa) fasta scores: E(): 1.3e-81, 52.860% id in 577 aa. Also similar to BP0789 (50.000% identity in 580 aa overlap).
 
 0.943
ilvI
N-terminal region of a putative membrane protein (Pseudogene); 4 probable transmembrane helices predicted for BP0787 by TMHMM2.0 at aa 21-43, 88-110, 117-139 and 154-176.
 
 0.942
BP0773
Similar to Methanococcus aeolicus acetohydroxyacid synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 aa) fasta scores: E(): 2.2e-48, 32.105% id in 570 aa, and to Methanococcus maripaludis acetohydroxyacid synthase large subunit IlvB TR:Q9Y8J0 (EMBL:AF118061) (587 aa) fasta scores: E(): 3.6e-46, 32.737% id in 559 aa; Belongs to the TPP enzyme family.
 
 0.940
BP0860
Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI or b0077 SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 2e-18, 28.571% id in 532 aa, and to Rhizobium meliloti probable AtrC acetolactate syntase AtrC TR:AAK65177 (EMBL:AE007243) (570 aa) fasta scores: E(): 4.3e-100, 50.722% id in 554 aa; Belongs to the TPP enzyme family.
 
 0.940
BP1535
Putative thiamine-pyrophosphate-requiring enzyme; Similar to Rhizobium loti acetolactate synthase I Mll3567 TR:Q98FY4 (EMBL:AP003002) (517 aa) fasta scores: E(): 3.9e-108, 59.38% id in 522 aa, and to Caulobacter crescentus thiamine-pyrophosphate-requiring enzyme Cc0393 TR:Q9AB41 (EMBL:AE005712) (512 aa) fasta scores: E(): 2.7e-86, 51.34% id in 520 aa.
 
 0.939
ilvG
Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 1.6e-49, 32.53% id in 544 aa, and to Rhizobium meliloti putative acetolactate synthase isozyme II large subunit protein TR:CAC46784 (EMBL:AL591789) (548 aa) fasta scores: E(): 6.4e-139, 62.63% id in 546 aa; Belongs to the TPP enzyme family.
  
 0.932
ilvB
Similar to Escherichia coli acetolactate synthase isozyme III large subunit IlvI or B0077 SW:ILVI_ECOLI (P00893) (574 aa) fasta scores: E(): 1e-42, 30.515% id in 544 aa, and to Methanococcus aeolicus acetohydroxyacid synthase large subunit IlvB TR:O08353 (EMBL:U35458) (599 aa) fasta scores: E(): 5.4e-59, 34.581% id in 561 aa; Belongs to the TPP enzyme family.
  
 0.931
ilvG-2
Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG or B3767 SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 3.7e-41, 28.54% id in 522 aa, and to Rhizobium loti acetolactate synthase large subunit Mlr1615 TR:Q98K66 (EMBL:AP002997) (549 aa) fasta scores: E(): 4e-111, 51.8% id in 554 aa; Belongs to the TPP enzyme family.
  
 0.931
BP3453
Similar to Escherichia coli acetolactate synthase isozyme II large subunit IlvG SW:ILVG_ECOLI (P00892) (548 aa) fasta scores: E(): 3e-50, 31.28% id in 537 aa, and to Pseudomonas aeruginosa probable decarboxylase PA2035 TR:Q9I280 (EMBL:AE004629) (552 aa) fasta scores: E(): 4.7e-121, 59.13% id in 553 aa; Belongs to the TPP enzyme family.
  
 0.931
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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