Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| era | lep | BP2430 | BP2432 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family. | 0.891 |
| era | rnc | BP2430 | BP2431 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.960 |
| era | rplM | BP2430 | BP2962 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 50s ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.400 |
| era | rpsB | BP2430 | BP1419 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Similar to Escherichia coli 30S ribosomal protein S2 RpsB or B0169 or Z0180 or Ecs0171 SW:RS2_ECOLI (P02351) (240 aa) fasta scores: E(): 5.1e-52, 61.3% id in 230 aa, and to Spirulina platensis 30S ribosomal protein S2 RpsB SW:RS2_SPIPL (P34831) (251 aa) fasta scores: E(): 2.9e-57, 62.14% id in 243 aa; Belongs to the universal ribosomal protein uS2 family. | 0.855 |
| era | rpsF | BP2430 | BP2796 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA. | 0.957 |
| era | rpsI | BP2430 | BP2961 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Similar to Escherichia coli 30s ribosomal protein S9 RpsI or b3230 or z4588 or Ecs4103 SW:RS9_ECOLI (P02363) (129 aa) fasta scores: E(): 3.5e-30, 65.35% id in 127 aa and to Neisseria meningitidis (serogroup A) 30s ribosomal protein S9 RpsI or Nma0379 or Nmb2056 TR:Q9JQZ9 (EMBL:AL162753) (130 aa) fasta scores: E(): 8.7e-38, 80.76% id in 130 aa; Belongs to the universal ribosomal protein uS9 family. | 0.948 |
| era | rpsO | BP2430 | BP0794 | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.864 |
| lep | era | BP2432 | BP2430 | Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.891 |
| lep | rnc | BP2432 | BP2431 | Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.951 |
| lep | rpmF | BP2432 | BP2445 | Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family. | Similar to Neisseria meningitidis 50s ribosomal protein l32 RpmF or Nma0544 SW:RL32_NEIMA (Q9JW52) (58 aa) fasta scores: E(): 1e-15, 70.69% id in 58 aa and Pseudomonas aeruginosa 50s ribosomal protein l32 RpmF or Pa2970 SW:RL32_PSEAE (Q9HZN4) (59 aa) fasta scores: E(): 2.1e-13, 64.4% id in 59 aa; Belongs to the bacterial ribosomal protein bL32 family. | 0.695 |
| rnc | era | BP2431 | BP2430 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.960 |
| rnc | lep | BP2431 | BP2432 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Signal peptidase I; Previously sequenced Bordetella pertussis leader peptidase Lep TR:Q9RN42 (EMBL:AF188620) (294 aa) fasta scores: E(): 1.9e-121, 100% id in 294 aa. Highly similar to Escherichia coli signal peptidase I LepB or b2568 SW:LEP_ECOLI (P00803) (324 aa) fasta scores: E(): 3.7e-22, 41.81% id in 342 aa, and to; Belongs to the peptidase S26 family. | 0.951 |
| rnc | rplM | BP2431 | BP2962 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50s ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.956 |
| rnc | rplS | BP2431 | BP0975 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.948 |
| rnc | rpmA | BP2431 | BP0748 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to Escherichia coli 50S ribosomal protein L27 RpmA or B3185 SW:RL27_ECOLI (P02427) (84 aa) fasta scores: E(): 2.8e-21, 71.084% id in 83 aa, and to Vibrio cholerae ribosomal protein L27 Vc0436 TR:Q9KUS9 (EMBL:AE004131) (86 aa) fasta scores: E(): 5.1e-23, 73.256% id in 86 aa; Belongs to the bacterial ribosomal protein bL27 family. | 0.954 |
| rnc | rpmF | BP2431 | BP2445 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to Neisseria meningitidis 50s ribosomal protein l32 RpmF or Nma0544 SW:RL32_NEIMA (Q9JW52) (58 aa) fasta scores: E(): 1e-15, 70.69% id in 58 aa and Pseudomonas aeruginosa 50s ribosomal protein l32 RpmF or Pa2970 SW:RL32_PSEAE (Q9HZN4) (59 aa) fasta scores: E(): 2.1e-13, 64.4% id in 59 aa; Belongs to the bacterial ribosomal protein bL32 family. | 0.951 |
| rnc | rpsB | BP2431 | BP1419 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to Escherichia coli 30S ribosomal protein S2 RpsB or B0169 or Z0180 or Ecs0171 SW:RS2_ECOLI (P02351) (240 aa) fasta scores: E(): 5.1e-52, 61.3% id in 230 aa, and to Spirulina platensis 30S ribosomal protein S2 RpsB SW:RS2_SPIPL (P34831) (251 aa) fasta scores: E(): 2.9e-57, 62.14% id in 243 aa; Belongs to the universal ribosomal protein uS2 family. | 0.943 |
| rnc | rpsF | BP2431 | BP2796 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 30s ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA. | 0.949 |
| rnc | rpsI | BP2431 | BP2961 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to Escherichia coli 30s ribosomal protein S9 RpsI or b3230 or z4588 or Ecs4103 SW:RS9_ECOLI (P02363) (129 aa) fasta scores: E(): 3.5e-30, 65.35% id in 127 aa and to Neisseria meningitidis (serogroup A) 30s ribosomal protein S9 RpsI or Nma0379 or Nmb2056 TR:Q9JQZ9 (EMBL:AL162753) (130 aa) fasta scores: E(): 8.7e-38, 80.76% id in 130 aa; Belongs to the universal ribosomal protein uS9 family. | 0.959 |
| rnc | rpsO | BP2431 | BP0794 | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.957 |
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