STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BP2550Putative enoyl-CoA hydratase; Similar to Sulfolobus tokodaii 254aa long hypothetical enoyl-CoA hydratase St0048 TR:BAB65003 (EMBL:AP000981) (254 aa) fasta scores: E(): 1e-16, 32.959% id in 267 aa, and to Mycobacterium tuberculosis probable enoyl-CoA hydratase Echa8 or Rv1070c or Mt1100 or Mtv017.23C SW:ECH8_MYCTU (O53418) (257 aa) fasta scores: E(): 1e-16, 28.409% id in 264 aa. (264 aa)    
Predicted Functional Partners:
BP3844
Putative enoyl-CoA hydratase/isomerase; Similar to Archaeoglobus fulgidus enoyl-CoA hydratase AF0963 TR:O29299 (EMBL:AE001038) (259 aa) fasta scores: E(): 1.4e-25, 36.51% id in 241 aa, and to Bacillus subtilis putative hydroxybutyryl-dehydratase FenO TR:Q9L7W1 (EMBL:AF218939) (260 aa) fasta scores: E(): 1.6e-25, 35.84% id in 265 aa; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
  0.882
BP3305
Similar to Caulobacter crescentus enoyl-CoA hydratase/isomerase family protein cc0397 TR:Q9AB37 (EMBL:AE005712) (256 aa) fasta scores: E(): 4.8e-33, 46.41% id in 237 aa, and to Mus musculus peroxisomal 3,2-trans-enoyl-CoA isomerase PecI SW:PECI_MOUSE (Q9WUR2) (358 aa) fasta scores: E(): 4.6e-20, 34.13% id in 249 aa.
  
  
  0.881
BP2557
Conserved hypothetical protein; Similar to many e.g. Pseudomonas aeruginosa hypothetical protein Pa1016 TR:Q9I4V7 (EMBL:AE004534) (383 aa) fasta scores: E(): 2.6e-46, 43.669% id in 387 aa.
  
 0.810
bvgS
Virulence sensor protein; Member of the two-component regulatory system BvgS/BvgA. Phosphorylates BvgA via a four-step phosphorelay in response to environmental signals.
    
 
 0.807
BP2551
Similar to many including: Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa0603 TR:Q9I5T5 (EMBL:AE004496) (369 aa) fasta scores: E(): 1.5e-46, 46.006% id in 363 aa and Escherichia coli O157:H7 EDL933 putative ATP-binding component of a transport system AfuC TR:AAG54709 (EMBL:AE005215) (352 aa) fasta scores: E(): 2.8e-40, 39.589% id in 341 aa.
  
    0.777
BP2552
Similar to many e.g. Rhizobium loti ABC transport system permease protein Mll3625 TR:Q98FT7 (EMBL:AP003002) (567 aa) fasta scores: E(): 4e-31, 26.964% id in 560 aa and Streptomyces coelicolor putative membrane protein Sc10a5.29C TR:O54120 (EMBL:AL021529) (589 aa) fasta scores: E(): 1.4e-40, 32.192% id in 584 aa, and to.
  
    0.775
BP2759
Putative thiolase; Similar to Acinetobacter calcoaceticus beta-ketoadipyl CoA thiolase PcaF SW:PCAF_ACICA (Q43974) (401 aa) fasta scores: E(): 7.9e-100, 68.67% id in 399 aa; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.761
BP0634
Similar to Bacillus subtilis acyl-CoA dehydrogenase AcdA or Acd SW:ACDA_BACSU (P45867) (379 aa) fasta scores: E(): 1.1e-49, 40.849% id in 377 aa, and to Bacillus halodurans acyl-CoA dehydrogenase AcdA or Bh3798 TR:Q9K6D1 (EMBL:AP001520) (380 aa) fasta scores: E(): 5.8e-53, 41.270% id in 378 aa.
 
 0.739
BP0145
Putative enoyl-CoA hydratase/isomerase; Identical to the previously sequenced Bordetella pertussis hypothetical 29.5 kDa protein TR:O30448 (EMBL:AF006000) (270 aa) fasta scores: E(): 3e-109, 100.000% id in 270 aa, and similar to Escherichia coli naphthoate synthase MenB or B2262 SW:MENB_ECOLI (P27290) (285 aa) fasta scores: E(): 3.5e-20, 33.969% id in 262 aa.
 
 
0.731
BP0420
Similar to Pseudomonas aeruginosa probable acyl-CoA dehydrogenase Pa1022 TR:Q9I4V2 (EMBL:AE004534) (381 aa) fasta scores: E(): 2.4e-29, 33.159% id in 383 aa, and to Mycobacterium tuberculosis CDC1551 acyl-CoA dehydrogenase, putative Mt3665 TR:AAK48023 (EMBL:AE007168) (385 aa) fasta scores: E(): 5.6e-27, 33.508% id in 382 aa.
  
 0.730
Your Current Organism:
Bordetella pertussis
NCBI taxonomy Id: 257313
Other names: B. pertussis Tohama I, Bordetella pertussis Tohama I
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