SDN50605.1 protein (Acetanaerobacterium elongatum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDN50605.1

Oligopeptide transport system permease protein. (305 aa)

Predicted Functional Partners:

SDN50560.1

0.999

SDN50267.1

0.999

SDN50306.1

0.999

SDN50472.1

0.999

SDN50514.1

0.999

SDN50219.1

0.998

SDN50383.1

0.995

SDN50428.1

0.991

SDN84128.1

0.971

SDO09354.1

0.936

Your Current Organism:

Acetanaerobacterium elongatum

NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDN50219.1	SDN50267.1	SAMN05192585_1212	SAMN05192585_1213	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
SDN50219.1	SDN50306.1	SAMN05192585_1212	SAMN05192585_1214	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.999
SDN50219.1	SDN50383.1	SAMN05192585_1212	SAMN05192585_1216	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.956
SDN50219.1	SDN50428.1	SAMN05192585_1212	SAMN05192585_1217	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein/oligopeptide transport system substrate-binding protein.	0.959
SDN50219.1	SDN50472.1	SAMN05192585_1212	SAMN05192585_1218	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.983
SDN50219.1	SDN50514.1	SAMN05192585_1212	SAMN05192585_1219	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.996
SDN50219.1	SDN50560.1	SAMN05192585_1212	SAMN05192585_12110	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.999
SDN50219.1	SDN50605.1	SAMN05192585_1212	SAMN05192585_12111	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.998
SDN50219.1	SDN84128.1	SAMN05192585_1212	SAMN05192585_1351	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system substrate-binding protein.	0.947
SDN50219.1	SDO09354.1	SAMN05192585_1212	SAMN05192585_1546	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.885
SDN50267.1	SDN50219.1	SAMN05192585_1213	SAMN05192585_1212	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
SDN50267.1	SDN50306.1	SAMN05192585_1213	SAMN05192585_1214	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.999
SDN50267.1	SDN50383.1	SAMN05192585_1213	SAMN05192585_1216	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.964
SDN50267.1	SDN50428.1	SAMN05192585_1213	SAMN05192585_1217	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein/oligopeptide transport system substrate-binding protein.	0.945
SDN50267.1	SDN50472.1	SAMN05192585_1213	SAMN05192585_1218	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.994
SDN50267.1	SDN50514.1	SAMN05192585_1213	SAMN05192585_1219	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.904
SDN50267.1	SDN50560.1	SAMN05192585_1213	SAMN05192585_12110	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.999
SDN50267.1	SDN50605.1	SAMN05192585_1213	SAMN05192585_12111	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.999
SDN50267.1	SDN84128.1	SAMN05192585_1213	SAMN05192585_1351	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system substrate-binding protein.	0.917
SDN50267.1	SDO09354.1	SAMN05192585_1213	SAMN05192585_1546	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system substrate-binding protein.	0.904