Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Psyc_0178 | agxT | Psyc_0178 | Psyc_0177 | Conserved hypothetical protein. | Possible serine-pyruvate aminotransferase. | 0.427 |
Psyc_0998 | agxT | Psyc_0998 | Psyc_0177 | Hypothetical protein; Phage related. | Possible serine-pyruvate aminotransferase. | 0.504 |
Psyc_1308 | agxT | Psyc_1308 | Psyc_0177 | Hypothetical protein; RBS found. | Possible serine-pyruvate aminotransferase. | 0.400 |
agxT | Psyc_0178 | Psyc_0177 | Psyc_0178 | Possible serine-pyruvate aminotransferase. | Conserved hypothetical protein. | 0.427 |
agxT | Psyc_0998 | Psyc_0177 | Psyc_0998 | Possible serine-pyruvate aminotransferase. | Hypothetical protein; Phage related. | 0.504 |
agxT | Psyc_1308 | Psyc_0177 | Psyc_1308 | Possible serine-pyruvate aminotransferase. | Hypothetical protein; RBS found. | 0.400 |
agxT | alaS | Psyc_0177 | Psyc_1460 | Possible serine-pyruvate aminotransferase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.483 |
agxT | gltB | Psyc_0177 | Psyc_1874 | Possible serine-pyruvate aminotransferase. | Glutamate synthase (NADPH) large subunit; This orf aligns best with NADPH-dependent glutamate synthase proteins as opposed to proteins that use other cofactors. | 0.508 |
agxT | lldA | Psyc_0177 | Psyc_1654 | Possible serine-pyruvate aminotransferase. | L-lactate dehydrogenase (cytochrome). | 0.456 |
agxT | purD | Psyc_0177 | Psyc_1061 | Possible serine-pyruvate aminotransferase. | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | 0.476 |
alaS | agxT | Psyc_1460 | Psyc_0177 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | Possible serine-pyruvate aminotransferase. | 0.483 |
gltB | agxT | Psyc_1874 | Psyc_0177 | Glutamate synthase (NADPH) large subunit; This orf aligns best with NADPH-dependent glutamate synthase proteins as opposed to proteins that use other cofactors. | Possible serine-pyruvate aminotransferase. | 0.508 |
lldA | agxT | Psyc_1654 | Psyc_0177 | L-lactate dehydrogenase (cytochrome). | Possible serine-pyruvate aminotransferase. | 0.456 |
purD | agxT | Psyc_1061 | Psyc_0177 | Phosphoribosylamine--glycine ligase; Belongs to the GARS family. | Possible serine-pyruvate aminotransferase. | 0.476 |