Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

fadB

Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family (719 aa)

Predicted Functional Partners:

fadA

0.993

Psyc_1310

0.974

fadA4

0.972

Psyc_1169

0.971

Psyc_0252

0.970

Psyc_0964

0.968

Psyc_0309

0.965

Psyc_1835

0.958

Psyc_0137

0.954

Psyc_0965

0.951

Your Current Organism:

Psychrobacter arcticus

NCBI taxonomy Id: 259536
Other names: P. arcticus 273-4, Psychrobacter arcticus, Psychrobacter arcticus 273-4, Psychrobacter arcticus str. 273-4, Psychrobacter arcticus strain 273-4, Psychrobacter sp. 273-4

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Psyc_0137	Psyc_1310	Psyc_0137	Psyc_1310	annotation not available	annotation not available	0.587
Psyc_0137	fadB	Psyc_0137	Psyc_1934	annotation not available	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.954
Psyc_0252	Psyc_1169	Psyc_0252	Psyc_1169	annotation not available	annotation not available	0.678
Psyc_0252	Psyc_1310	Psyc_0252	Psyc_1310	annotation not available	annotation not available	0.693
Psyc_0252	Psyc_1835	Psyc_0252	Psyc_1835	annotation not available	annotation not available	0.927
Psyc_0252	fadA	Psyc_0252	Psyc_1933	annotation not available	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.919
Psyc_0252	fadA4	Psyc_0252	Psyc_1398	annotation not available	annotation not available	0.687
Psyc_0252	fadB	Psyc_0252	Psyc_1934	annotation not available	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.970
Psyc_0309	fadB	Psyc_0309	Psyc_1934	Putative acyl-CoA carboxylase (Beta subunit) protein; Leucine, Isoleucine, and Valine degradation, Propionate metabolism	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.965
Psyc_0964	fadB	Psyc_0964	Psyc_1934	Putative acyl-CoA dehydrogenase; One sugar transporter domain likely involved in binding since membrane transporter proteins have 12 of these domains	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.968
Psyc_0965	fadB	Psyc_0965	Psyc_1934	Putative acyl-CoA dehydrogenase; Contains central domain and c- terminus addtional sequences as seen is Acientobacter	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.951
Psyc_1169	Psyc_0252	Psyc_1169	Psyc_0252	annotation not available	annotation not available	0.678
Psyc_1169	Psyc_1310	Psyc_1169	Psyc_1310	annotation not available	annotation not available	0.681
Psyc_1169	Psyc_1835	Psyc_1169	Psyc_1835	annotation not available	annotation not available	0.937
Psyc_1169	fadA	Psyc_1169	Psyc_1933	annotation not available	3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed	0.912
Psyc_1169	fadA4	Psyc_1169	Psyc_1398	annotation not available	annotation not available	0.657
Psyc_1169	fadB	Psyc_1169	Psyc_1934	annotation not available	Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate; In the C-terminal section; belongs to the 3- hydroxyacyl-CoA dehydrogenase family	0.971
Psyc_1310	Psyc_0137	Psyc_1310	Psyc_0137	annotation not available	annotation not available	0.587
Psyc_1310	Psyc_0252	Psyc_1310	Psyc_0252	annotation not available	annotation not available	0.693
Psyc_1310	Psyc_1169	Psyc_1310	Psyc_1169	annotation not available	annotation not available	0.681

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