STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mbur_0947Serine kinase RIO1; Evidence code ER2. (264 aa)    
Predicted Functional Partners:
Mbur_1807
Protein of unknown function UPF0129; Evidence code ER4.
   
 0.997
rps5p
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.994
rps11p
SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.994
rps6e
SSU ribosomal protein S6E; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.990
rps4p
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.987
rps3ae
SSU ribosomal protein S3Ae; Evidence code ER2; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 
 0.975
rps3p
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.969
Mbur_0099
RIO2-type Serine Protein Kinase; Evidence code ER3.
  
 
0.965
rps15p
SSU ribosomal protein S15P; Evidence code ER2.
 
  0.963
rps10p
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 0.930
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.