STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mbur_1811HTH DNA-binding domain protein; Evidence code ER4. (323 aa)    
Predicted Functional Partners:
tiaS
Hypothetical protein; ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.
 
     0.784
Mbur_0936
Hypothetical protein; Evidence code ER5.
 
     0.728
Mbur_1772
tRNA-guanine transglycosylase; Evidence code ER3.
  
     0.715
Mbur_1373
Hypothetical protein; Evidence code ER5.
  
     0.694
Mbur_1374
Nucleic acid binding protein; Evidence code ER4.
 
     0.688
Mbur_1361
Hypothetical protein; Evidence code ER5.
 
     0.680
Mbur_0623
Metal-dependent protease, JAMM-like; Evidence code ER2.
  
     0.679
Mbur_0370
NMD3 family protein; Evidence code ER4.
 
   
 0.670
Mbur_1362
Single-stranded DNA-binding protein; Evidence code ER3; Replication factor A; RP-A; RF-A.
 
     0.667
priS
DNA primase, small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
  
     0.657
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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