STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaDPyruvoyl-dependent arginine decarboxylase; Evidence code ER3; Belongs to the PdaD family. (180 aa)    
Predicted Functional Partners:
Mbur_1896
Agmatinase; Evidence code ER3; Agmatine ureohydrolase; Belongs to the arginase family.
 
  
 0.957
argH
Argininosuccinate lyase; Evidence code ER2; Arginosuccinase.
     
 0.805
Mbur_1871
Iron dependent repressor; Evidence code ER3.
 
     0.591
Mbur_1868
Deoxyhypusine synthase; Evidence code ER3.
 
   
 0.584
Mbur_1872
Ferrous iron transport protein B; Evidence code ER3.
       0.529
Mbur_1873
Hypothetical protein; Evidence code ER5.
       0.402
leuS
Leucyl-tRNA synthetase; Evidence code ER2; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.400
Your Current Organism:
Methanococcoides burtonii
NCBI taxonomy Id: 259564
Other names: M. burtonii DSM 6242, Methanococcoides burtonii DSM 6242, Methanococcoides burtonii str. DSM 6242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.