STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (473 aa)    
Predicted Functional Partners:
AEJ01096.1
PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: nit:NAL212_0871 ribulose-bisphosphate carboxylase.
 
 0.999
AEJ02970.1
PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: nit:NAL212_2943 ribulose-bisphosphate carboxylase.
 
 0.996
AEJ01138.1
PFAM: Phosphoribulokinase/uridine kinase; KEGG: nit:NAL212_1369 phosphoribulokinase.
 
 
 0.966
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.913
pgk
KEGG: nit:NAL212_0186 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.909
cbbL-2
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 
0.903
AEJ01098.1
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: nit:NAL212_0873 transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.861
AEJ01094.1
KEGG: nit:NAL212_0869 von Willebrand factor type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A.
 
   
 0.753
AEJ01095.1
KEGG: nit:NAL212_0870 nitric oxide reductase NorQ protein.
 
   
 0.650
AEJ00762.1
KEGG: nit:NAL212_2121 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.
 
     0.626
Your Current Organism:
Nitrosomonas sp. Is79A3
NCBI taxonomy Id: 261292
Other names: N. sp. Is79A3
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