STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO55103.1Transcriptional regulator. (364 aa)    
Predicted Functional Partners:
yxlE
Negative regulatory protein yxlE.
 
     0.897
CUO55205.1
ABC transporter permease.
 
     0.897
ecsA_1
ABC transporter-like protein.
 
     0.888
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.713
CUO53593.1
Putative ATPase.
   
 
 0.665
CUP13447.1
Tetratricopeptide repeat protein.
    
 0.633
immR_1
Putative transcriptional regulator.
 
     0.618
porA_1
Pyruvate-flavodoxin oxidoreductase.
  
 
  0.490
CUO88943.1
Transporter protein.
  
     0.484
CUP21556.1
ABC transporter permease.
  
     0.436
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.