STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kfoC_1Glycosyl transferase. (329 aa)    
Predicted Functional Partners:
hyaD_1
Beta-glycosyltransferase.
  
     0.767
hyaD_2
Beta-glycosyltransferase.
  
     0.765
CUP39664.1
glycosyltransferase%2C SP_1767 family.
 
 
  0.732
tagE
Glycosyl transferase%2C group 1 family protein.
 
  0.635
CUP39409.1
Capsular polysaccharide biosynthesis protein.
 
    0.554
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.551
CUP13447.1
Tetratricopeptide repeat protein.
     
 0.484
CUP39609.1
Polysaccharide biosynthesis protein CpsM(V) family protein.
    0.464
rtcB
RNA-splicing ligase RtcB.
  
    0.455
CUP39640.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.415
Your Current Organism:
Intestinibacter bartlettii
NCBI taxonomy Id: 261299
Other names: ATCC BAA-827, CCUG 48940, Clostridium bartlettii, Clostridium bartlettii Song et al. 2004, DSM 16795, I. bartlettii, Intestinibacter bartlettii (Song et al. 2004) Gerritsen et al. 2014, WAL 16138
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