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prfB protein (Thermus thermophilus HB27) - STRING interaction network
"prfB" - Peptide chain release factor 2 in Thermus thermophilus HB27
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
prfBPeptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (378 aa)    
Predicted Functional Partners:
rpsP
30S ribosomal protein S16; Binds to the lower part of the body of the 30S subunit, where it stabilizes two of its domains (88 aa)
 
      0.987
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (101 aa)
 
      0.981
rpmA
annotation not available (85 aa)
 
      0.973
rpsI
30S ribosomal protein S9; Part of the top of the head of the 30S subunit. The C- terminal region penetrates the head emerging in the P-site where it contacts tRNA (By similarity) (128 aa)
   
 
  0.971
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (163 aa)
   
      0.965
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (118 aa)
 
 
  0.961
rplQ
annotation not available (118 aa)
   
      0.960
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (206 aa)
   
 
  0.953
rpsB
30S ribosomal protein S2; Spans the head-body hinge region of the 30S subunit. Is loosely associated with the 30S subunit (By similarity) (256 aa)
   
 
  0.952
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (By similarity) (156 aa)
 
 
  0.952
Your Current Organism:
Thermus thermophilus HB27
NCBI taxonomy Id: 262724
Other names: T. thermophilus HB27, Thermus thermophilus HB27, Thermus thermophilus str. HB27, Thermus thermophilus strain HB27
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