STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiO-2ABC-type cobalt transport system, ATPase; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (271 aa)    
Predicted Functional Partners:
cbiQ
ABC-type cobalt transport system, permease; Identified by sequence similarity; putative.
 
 0.999
PAM_019
Conserved hypothetical protein; Identified by sequence similarity; putative.
   
 
 0.954
oppF
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative.
 
 0.917
dppD-2
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative.
 
     
0.899
PAM_193
Conserved hypothetical protein; Identified by sequence similarity; putative; ATPase components of various ABC-type transport system.
 
0.894
cbiO
ABC-type cobalt transport system, ATPase; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
 
0.871
potB
ABC-type spermidine/putrescine transport system, permease component I; Identified by sequence similarity; putative.
   
  
 0.840
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.758
dppD
ABC-type dipeptide/oligopeptide transport system, ATPase component; Identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
 
     
0.675
PAM_178
Identified by sequence similarity; putative.
  
    0.618
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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