Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GRS1 | PAM_627 | PAM_626 | PAM_627 | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.935 |
| GRS1 | RpoD | PAM_626 | PAM_628 | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.859 |
| GRS1 | ffh | PAM_626 | PAM_678 | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | Signal recognition particle GTPase; Identified by sequence similarity; putative | 0.696 |
| GRS1 | nfo | PAM_626 | PAM_454 | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | Deoxyribonuclease iv; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate | 0.666 |
| PAM_627 | GRS1 | PAM_627 | PAM_626 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | 0.935 |
| PAM_627 | RpoD | PAM_627 | PAM_628 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.897 |
| PAM_627 | ffh | PAM_627 | PAM_678 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Signal recognition particle GTPase; Identified by sequence similarity; putative | 0.725 |
| PAM_627 | nfo | PAM_627 | PAM_454 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Deoxyribonuclease iv; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate | 0.707 |
| RpoD | GRS1 | PAM_628 | PAM_626 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Glycyl-trna synthetase, class ii; Catalyzes the attachment of glycine to tRNA(Gly) | 0.859 |
| RpoD | PAM_627 | PAM_628 | PAM_627 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.897 |
| RpoD | efp | PAM_628 | PAM_276 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | 0.769 |
| RpoD | ffh | PAM_628 | PAM_678 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Signal recognition particle GTPase; Identified by sequence similarity; putative | 0.902 |
| RpoD | nfo | PAM_628 | PAM_454 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Deoxyribonuclease iv; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate | 0.691 |
| RpoD | srmB | PAM_628 | PAM_453 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Superfamily II DNA and RNA helicase; Identified by sequence similarity; putative | 0.427 |
| RpoD | uvrC | PAM_628 | PAM_433 | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | Nuclease subunit of the excinuclease complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision | 0.547 |
| efp | RpoD | PAM_276 | PAM_628 | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | Dna-directed rna polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.769 |
| efp | nfo | PAM_276 | PAM_454 | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | Deoxyribonuclease iv; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic (AP) sites, generating a 3'-hydroxyl group and a 5'-terminal sugar phosphate | 0.630 |
| efp | srmB | PAM_276 | PAM_453 | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | Superfamily II DNA and RNA helicase; Identified by sequence similarity; putative | 0.430 |
| efp | uvrA | PAM_276 | PAM_450 | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | Excinuclease atpase subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate | 0.600 |
| efp | uvrC | PAM_276 | PAM_433 | Translation elongation factor ef-p; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase | Nuclease subunit of the excinuclease complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision | 0.521 |
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