STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvrBHelicase subunit of the DNA excision repair; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA sub [...] (670 aa)    
Predicted Functional Partners:
uvrC
Nuclease subunit of the excinuclease complex; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
 
 0.999
uvrA
Excinuclease ATPase subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
  
 0.999
uvrD-7
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.969
uvrD
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
uvrD-2
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
uvrD-3
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
uvrD-4
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
uvrD-5
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
uvrD-6
ATP-dependent DNA helicase; Identified by sequence similarity; putative.
  
 
 0.966
hsdM
Type I restriction-modification system methyltransferase subunit; Identified by sequence similarity; putative.
   
 
 0.947
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.