Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PTO0606 | PTO1399 | PTO0606 | PTO1399 | AMP-binding enzyme. | Cytochrome P450. | 0.775 |
PTO0606 | rpl44e | PTO0606 | PTO0407 | AMP-binding enzyme. | Large subunit ribosomal protein L44E; Binds to the 23S rRNA. | 0.540 |
PTO0606 | rpl6 | PTO0606 | PTO0656 | AMP-binding enzyme. | Large subunit ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.855 |
PTO0606 | rps3ae | PTO0606 | PTO1524 | AMP-binding enzyme. | Small subunit ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.430 |
PTO0606 | rps4 | PTO0606 | PTO1220 | AMP-binding enzyme. | Small subunit ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.546 |
PTO1022 | PTO1399 | PTO1022 | PTO1399 | medium-chain-fatty-acid--CoA ligase. | Cytochrome P450. | 0.775 |
PTO1022 | rpl44e | PTO1022 | PTO0407 | medium-chain-fatty-acid--CoA ligase. | Large subunit ribosomal protein L44E; Binds to the 23S rRNA. | 0.601 |
PTO1022 | rpl6 | PTO1022 | PTO0656 | medium-chain-fatty-acid--CoA ligase. | Large subunit ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.855 |
PTO1022 | rps3ae | PTO1022 | PTO1524 | medium-chain-fatty-acid--CoA ligase. | Small subunit ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.430 |
PTO1022 | rps4 | PTO1022 | PTO1220 | medium-chain-fatty-acid--CoA ligase. | Small subunit ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.546 |
PTO1399 | PTO0606 | PTO1399 | PTO0606 | Cytochrome P450. | AMP-binding enzyme. | 0.775 |
PTO1399 | PTO1022 | PTO1399 | PTO1022 | Cytochrome P450. | medium-chain-fatty-acid--CoA ligase. | 0.775 |
PTO1399 | PTO1535 | PTO1399 | PTO1535 | Cytochrome P450. | Phytoene synthase. | 0.567 |
PTO1399 | fen | PTO1399 | PTO0228 | Cytochrome P450. | RAD-2/FEN-1 exonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair (BER) pathwa [...] | 0.568 |
PTO1399 | mre11 | PTO1399 | PTO0240 | Cytochrome P450. | DNA repair protein; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family. | 0.621 |
PTO1399 | rad50 | PTO1399 | PTO0239 | Cytochrome P450. | DNA repair protein Rad50; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily. | 0.620 |
PTO1399 | rpl44e | PTO1399 | PTO0407 | Cytochrome P450. | Large subunit ribosomal protein L44E; Binds to the 23S rRNA. | 0.638 |
PTO1399 | rpl6 | PTO1399 | PTO0656 | Cytochrome P450. | Large subunit ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.782 |
PTO1399 | rps3ae | PTO1399 | PTO1524 | Cytochrome P450. | Small subunit ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. | 0.664 |
PTO1399 | rps4 | PTO1399 | PTO1220 | Cytochrome P450. | Small subunit ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.568 |
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