STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ89553.1Predicted nuclease of the RNAse H fold, HicB family. (151 aa)    
Predicted Functional Partners:
SJZ89538.1
Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family.
   
 
 0.959
SJZ45794.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.563
SJZ89574.1
HNH endonuclease.
       0.489
SJZ89506.1
Phage transcriptional activator, RinA family.
       0.476
SJZ89333.1
Putative HNHc nuclease.
 
     0.424
SJZ45782.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.423
SJZ89615.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
     0.420
SJZ89886.1
Phage tail tape measure protein, TP901 family, core region.
 
     0.415
SJZ89656.1
ATP-dependent protease ClpP, protease subunit; Belongs to the peptidase S14 family.
 
     0.406
Your Current Organism:
Pilibacter termitis
NCBI taxonomy Id: 263852
Other names: CCUG 49613, P. termitis, Pilibacter termitis Higashiguchi et al. 2006, gut bacterium 1 of Coptotermes formosanus, strain TI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.