Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| r(p)l27 | rl13 | pc0218 | pc1757 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
| r(p)l27 | rnc | pc0218 | pc0274 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Putative Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.945 |
| r(p)l27 | rplC | pc0218 | pc0412 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Probable 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.996 |
| r(p)l27 | rplS | pc0218 | pc0657 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Probable ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| r(p)l27 | rplT | pc0218 | pc0704 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Probable ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.996 |
| r(p)l27 | rpmF | pc0218 | pc1315 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Similar to 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.995 |
| r(p)l27 | rpsF | pc0218 | pc1592 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Putative ribosomal protein S6 (BS9); Binds together with S18 to 16S ribosomal RNA. | 0.995 |
| r(p)l27 | rpsI | pc0218 | pc1756 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Strongly similar to small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
| r(p)l27 | rpsO | pc0218 | pc0644 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Probable 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
| r(p)l27 | rpsP | pc0218 | pc0655 | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | Similar to 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
| rl13 | r(p)l27 | pc1757 | pc0218 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Strongly similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.996 |
| rl13 | rnc | pc1757 | pc0274 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.951 |
| rl13 | rplC | pc1757 | pc0412 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Probable 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
| rl13 | rplS | pc1757 | pc0657 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Probable ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
| rl13 | rplT | pc1757 | pc0704 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Probable ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| rl13 | rpmF | pc1757 | pc1315 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Similar to 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.995 |
| rl13 | rpsF | pc1757 | pc1592 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative ribosomal protein S6 (BS9); Binds together with S18 to 16S ribosomal RNA. | 0.996 |
| rl13 | rpsI | pc1757 | pc1756 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Strongly similar to small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rl13 | rpsO | pc1757 | pc0644 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Probable 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
| rl13 | rpsP | pc1757 | pc0655 | Probable large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Similar to 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
page 1 of 6