STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknSimilar to serine/threonine protein kinase. (529 aa)    
Predicted Functional Partners:
rsbW
Similar to rsbW, negative regulator of sigma-B activity (switch protein/serine kinase).
  
 
 0.976
spoIiaa
Similar to sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.963
pc0720
Similar to serine/threonine phosphoprotein phosphatase.
 
 0.944
sctQ
Similar to flagellar motor switch protein (= type III secretion translocase SctQ).
  
    0.826
pc1391
Conserved hypothetical protein.
 
 
 0.812
pc1124
Similar to calcium-dependent protein kinase 9.
 
  
 0.779
pc1080
Conserved hypothetical protein.
  
0.697
sctN
Strongly similar to type III secretion pathway protein sctN.
  
    0.693
ptc1
Similar to phosphoprotein phosphatase.
  
 
 0.688
pc0171
Similar to O-linked N-acetylglucosamine transferase.
 
 
 0.685
Your Current Organism:
Protochlamydia amoebophila
NCBI taxonomy Id: 264201
Other names: C. Protochlamydia amoebophila UWE25, Candidatus Protochlamydia amoebophila UWE25, Candidatus Protochlamydia amoebophila str. UWE25, Candidatus Protochlamydia amoebophila strain UWE25, Parachlamydia sp. UWE25, Parachlamydia-related symbiont UWE25, endosymbiont of Acanthamoeba sp. UWE25
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