STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_17330AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
FB00_17345
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.892
FB00_17325
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.829
FB00_17350
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.730
FB00_17335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
FB00_17840
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.606
FB00_03740
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.582
FB00_03765
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.552
FB00_03790
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.552
FB00_17365
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.495
FB00_17340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.492
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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