STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd0632Hypothetical protein with similarity to TolB. (984 aa)    
Predicted Functional Partners:
agmU
Adventurous gliding motility locus; hypothetical protein.
 
  
 0.797
agmU-2
Adventurous gliding motility locus; hypothetical protein.
 
    0.754
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.705
Bd2372
Putative adventurous gliding motility locus; hypothetical protein.
 
 
   0.699
Bd0635
Conserved hypothetical protein.
  
    0.671
Bd3790
Hypothetical DnaJ like protein (chaperone); hypothetical protein.
 
   
 0.661
Bd0416
Hypothetical abductin-like protein; Similarity to adventurous gliding motility protein X, putative adventurous gliding motility locus; hypothetical protein.
 
 
   0.641
Bd0126
TPR-domain containing protein; Putative TPR repeat; hypothetical protein.
 
    0.543
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.537
Bd3409
Hypothetical protein.
 
  
 0.536
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.