STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1111ABC-type antimicrobial peptide transport system, ATPase component; hypothetical protein. (229 aa)    
Predicted Functional Partners:
Bd1112
ABC-type antimicrobial peptide transport system, permease component; hypothetical protein.
 
 0.983
Bd1110
Conserved hypothetical protein.
 
  
 0.957
Bd1108
Putative lipoprotein; hypothetical protein.
 
  
 0.952
appD
Putative oligopeptide transport system ATP-binding protein; InterPro: AAA ATPase superfamily; hypothetical protein; Belongs to the ABC transporter superfamily.
 
     
0.899
macB
Macrolide specific ABC-type transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
0.775
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.727
lolC
Lipoprotein releasing system transmembrane protein; InterPro: DUF214; hypothetical protein.
 
 
 0.681
Bd1774
Lipoprotein releasing system transmembrane protein; hypothetical protein.
 
 
 0.681
lolC2
ABC-type transport system, involved in lipoprotein release, permease component; hypothetical protein.
  
 
 0.681
Bd3372
Manganese and zinc uptake system ATP-binding protein; hypothetical protein.
  
     0.675
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.