STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1817HD-GYP domain; hypothetical protein. (308 aa)    
Predicted Functional Partners:
Bd1822
Conserved hypothetical protein; HD-GYP domain.
  
   
 0.898
pleD
Two-component response regulator with GGDEF domain; hypothetical protein.
 
   
 0.860
Bd1762
HD-GYP domain; hypothetical protein.
  
   
 0.817
exoD
Exopolysaccharide synthesis protein.
      
 0.760
Bd2421
Putative integral membrane protein containing HD domain; InterPro: Metal dependent phosphohydrolase HD domain,; hypothetical protein.
  
     0.757
Bd3880
Conserved hypothetical protein; HD-GYP domain.
      
 0.630
rnpO
Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
      
 0.624
eriC
Chloride channel protein.
       0.608
Bd0742
Sensory box/GGDEF domain protein, InterPro: Domain of unknown function DUF9; hypothetical protein.
 
 
 0.599
Bd3125
Sensor histidine kinase; InterPro: Domain of unknown function DUF9; hypothetical protein.
  
 
 0.590
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
Server load: high (90%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.