STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (402 aa)    
Predicted Functional Partners:
ddlA
D-alanine-D-alanine ligase; Cell wall formation.
 
 
 0.985
alaDH
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.971
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.962
dadA
D-amino acid dehydrogenase small subunit; hypothetical protein.
  
  
 0.888
Bd3125
Sensor histidine kinase; InterPro: Domain of unknown function DUF9; hypothetical protein.
     
 0.827
Bd3126
Sensor histidine kinase.
  
    0.826
Bd3121
ABC transport system involved in organic solvent resistance, ATP-binding protein; hypothetical protein.
       0.823
Bd3123
ABC transport system involved in organic solvent resistance, permease protein; hypothetical protein.
       0.823
cysE
Serine acetyltransferase; InterPro: Bacterial transferase hexapeptide repeat; hypothetical protein.
     
 0.812
Bd3117
InterPro: HD domain; hypothetical protein.
       0.802
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.