STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd3165InterPro: NHL repeat; hypothetical protein. (612 aa)    
Predicted Functional Partners:
Bd3164
Hypothetical protein predicted by Glimmer/Critica.
       0.746
Bd1359
Conserved hypothetical protein.
  
     0.521
Bd1538
Conserved hypothetical protein; Similar to Collagen alpha 3(VI) chain precursor; hypothetical protein.
  
 
   0.514
Bd0376
Extracellular serine protease; hypothetical protein.
  
 
 0.510
Bd3159
Hypothetical protein.
   
   0.463
Bd0056
Conserved hypothetical protein.
  
     0.454
Bd3162
InterPro: DAG-kinase catalytic domain (presumed); hypothetical protein.
       0.443
lmbP
Galactokinase; Predicted kinase related to galactokinase and mevalonate kinase, -glycero-D-manno-heptose 7-phosphate kinase; hypothetical protein.
  
     0.435
Bd2875
Putative hemagglutinin/hemolysin-related protein.
  
     0.428
Bd3161
Putative dehydrogenase.
  
    0.426
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.