STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd3176YkuD domain-containing protein; Unnamed protein product; hypothetical protein. (271 aa)    
Predicted Functional Partners:
Bd0816
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); hypothetical protein.
     
  0.499
Bd2460
InterPro: Penicillin binding protein transpeptidase domain, COG0768 Cell division protein FtsI/penicillin-binding protein 2; hypothetical protein.
     
  0.499
dacB
D-Ala-D-Ala carboxypeptidase 3 (S13) family; dacB; D-alanyl-D-alanine carboxypeptidase; hypothetical protein.
     
  0.499
mcp-5
InterPro: Bacterial chemotaxis sensory transducer; hypothetical protein.
       0.470
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.