STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLGlutamate-1-semialdehyde 2,1-aminomutase; InterPro: Aminotransferase class-III pyridoxal-phosphate; hypothetical protein. (426 aa)    
Predicted Functional Partners:
hemB
InterPro: Delta-aminolevulinic acid dehydratase; hypothetical protein; Belongs to the ALAD family.
 
 
 0.997
hemA
HemA protein; Glutamyl-tRNA reductase.
  
 0.997
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.987
hemE
InterPro: Uroporphyrinogen decarboxylase (URO-D); hypothetical protein.
 
  
 0.986
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
 
  
 0.972
hemN
InterPro: Oxygen-independent coproporphyrinogen III oxidase HemN; hypothetical protein; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.883
hemG-2
HemG protein; InterPro: Protoporphyrinogen oxidase; hypothetical protein.
 
  
 0.848
Bd3451
Two-component response regulator; Conserved hypothetical protein.
     
 0.826
Bd3450
InterPro: Histidine kinase C-terminal; hypothetical protein.
       0.823
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.654
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.