STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd3647Predicted membrane protein; Putative sialidase; hypothetical protein. (307 aa)    
Predicted Functional Partners:
lpdA
Dihydrolipoamide dehydrogenase; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein.
      
 0.760
htrA-2
Similar to heat-shock protein htrA serine protease; InterPro: Serine proteases trypsin family; hypothetical protein.
     
 0.673
bacA
Bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.641
Bd0397
InterPro: Protein phosphatase 2C domain; hypothetical protein.
  
 
 0.587
Bd3430
InterPro: Histidine kinase C-terminal; hypothetical protein.
   
 
 0.558
Bd3648
Two-component hybrid sensor and regulator.
     
 0.546
Bd3649
InterPro: Response regulator receiver domain; hypothetical protein.
 
     0.542
Bd3650
Two-component hybrid sensor and regulator; InterPro: Histidine kinase C-terminal; hypothetical protein.
   
 
 0.539
Bd2850
Putative secreted protein.
  
     0.535
Bd1169
Large Ala/Glu-rich protein; Also similar Myosin heavy chain, skeletal muscle; hypothetical protein.
  
 
 0.529
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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