STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcGPhosphoribosyl-dephospho-CoA transferase; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme- A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein] (212 aa)    
Predicted Functional Partners:
mdcD
Malonate decarboxylase, beta subunit; Identified by similarity to GB:BAA36207.1
 
  
 0.988
mdcE
Malonate decarboxylase, gamma subunit; Identified by match to protein family HMM PF06833
 
  
 0.987
mdcH
Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to GB:BAA36210.1; match to protein family HMM PF00698
 
  
 0.987
mdcA
Malonate decarboxylase, alpha subunit; Identified by match to protein family HMM TIGR01110
 
  
 0.986
citG
Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase
 
  
 0.986
mdcC
Malonate decarboxylase acyl carrier protein; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism
 
  
 0.986
madL
Malonate transporter, MadL subunit; Identified by match to protein family HMM PF03817
 
     0.934
madM
Malonate transporter, MadM subunit; Identified by match to protein family HMM PF03818; match to protein family HMM TIGR00808
 
    0.934
PSPPH_0442
Malonate utilization transcriptional regulator; Identified by similarity to GB:AAC45461.1; match to protein family HMM PF00126; match to protein family HMM PF03466
 
    0.809
PSPPH_0432
PAAR motif family; Identified by match to protein family HMM PF05488
 
     0.512
Your Current Organism:
Pseudomonas syringae phaseolicola
NCBI taxonomy Id: 264730
Other names: P. syringae pv. phaseolicola 1448A, Pseudomonas syringae phaseolicola, Pseudomonas syringae pv. phaseolicola 1448A, Pseudomonas syringae pv. phaseolicola str. 1448A, Pseudomonas syringae pv. phaseolicola strain 1448A
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