STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRU_1359Conserved hypothetical protein; Identified by similarity to GB:BAD48392.1. (776 aa)    
Predicted Functional Partners:
PRU_1357
Conserved domain protein; Identified by similarity to GB:AAO76686.1.
     
 0.852
PRU_1450
Conserved hypothetical protein; Identified by similarity to GB:AAQ67102.1.
  
  
 0.786
PRU_2280
BNR/Asp-box repeat domain protein; Identified by match to protein family HMM PF02012.
 
   
 0.783
PRU_0007
Conserved hypothetical protein; Identified by similarity to GB:AAO78684.1.
  
    0.782
PRU_0993
Putative lipoprotein.
  
     0.773
PRU_1358
Hypothetical protein; Identified by glimmer; putative.
       0.773
PRU_1066
Conserved hypothetical protein; Identified by similarity to GB:AAO75916.1.
  
     0.770
PRU_1072
Conserved hypothetical protein; Identified by similarity to GB:AAO76007.1.
  
     0.769
PRU_2286
Conserved hypothetical protein; Identified by similarity to GB:CAE79375.1; match to protein family HMM PF03938.
  
     0.767
PRU_2326
Conserved hypothetical protein; Identified by similarity to GB:AAO78560.1.
  
     0.767
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.