STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10D-fae1AGlycosyl hydrolase, family 10/isoamylase domain/esterase family protein; Involved in degradation of plant cell wall polysaccharides. Has endo-xylanase activity towards substrates such as oat spelt xylan (OSX), acetylated xylo-oligosaccharides and acetylated xylan, producing primarily xylobiose; cannot hydrolyze xylobiose to xylose. Also has feruloyl esterase activity, releasing ferulic acid from methylferulate, and from the more natural substrates wheat bran, corn fiber, and XOS(FA,Ac), a corn fiber-derived substrate enriched in O-acetyl and ferulic acid esters. Exhibits negligible ace [...] (726 aa)    
Predicted Functional Partners:
PRU_2747
Conserved domain protein.
 
 0.800
PRU_2739
Endo-1,4-beta-xylanase; Identified by similarity to GB:AAB81559.1; match to protein family HMM PF00331.
 
   0.799
PRU_0631
Conserved hypothetical protein; Identified by similarity to GB:AAO79291.1.
    
 
 0.790
PRU_0081
Putative alpha-glucuronidase; Identified by similarity to SP:P96105.
 
   
 0.782
PRU_1673
Lipase domain protein; Identified by similarity to GB:AAF87662.1.
 
  
 0.779
PRU_2702
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
 
   
 0.778
PRU_1864
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.773
PRU_2729
Conserved hypothetical protein; Identified by similarity to GB:AAO76117.1.
 
   
 0.768
PRU_2597
Xylan 1,4-beta-xylosidase/alpha-N-arabinofuranosidase; Identified by similarity to SP:P48791; similarity to SP:P49943; match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.758
PRU_2744
Glycosyl hydrolase, family 43/carbohydrate binding module, family 6 domain protein; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
   
 0.755
Your Current Organism:
Prevotella ruminicola
NCBI taxonomy Id: 264731
Other names: P. ruminicola 23, Prevotella ruminicola 23, Prevotella ruminicola Bryant 23, Prevotella ruminicola str. 23, Prevotella ruminicola strain 23
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