Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Ribosomal large subunit pseudouridine synthase E (176 aa)
Predicted Functional Partners:
Isocitrate dehydrogenase (NADP) (413 aa)
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (499 aa)
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system (361 aa)
Hypothetical protein (185 aa)
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (302 aa)
Cupin 4 (392 aa)
Cupin 4 (392 aa)
Pseudouridine synthase, RluD; Responsible for synthesis of pseudouridine from uracil (326 aa)
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil (356 aa)
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (569 aa)
Your Current Organism:
NCBI taxonomy Id: 265072 Other names: M. flagellatus, M. flagellatus KT, Methylobacillus, Methylobacillus flagellatus, Methylobacillus flagellatus KT, Methylobacillus flagellatus str. KT, Methylobacillus flagellatus strain KT