STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0245PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A2907 enoyl-CoA hydratase/isomerase. (260 aa)    
Predicted Functional Partners:
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
  
 
 0.910
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
  
 
 0.910
Rxyl_0246
KEGG: tfu:Tfu_0193 similar to carbonic anhydrase/acetyltransferase isoleucine patch superfamily.
  
  
 0.790
Rxyl_2454
PFAM: Thiolase; KEGG: sru:SRU_1460 fatty oxidation complex, beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.789
Rxyl_0244
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_A2908 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 0.781
Rxyl_0247
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bur:Bcep18194_A4039 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
  
 0.781
Rxyl_0241
TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bja:blr4371 hypothetical protein.
       0.773
Rxyl_0242
KEGG: sco:SCO1139 integral membrane protein.
       0.773
Rxyl_0243
PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll0952 hypothetical protein.
       0.773
Rxyl_0375
PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: cef:CE0723 putative glutaryl-CoA dehydrogenase precursor.
  
 0.706
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.