STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0496PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase. (450 aa)    
Predicted Functional Partners:
Rxyl_1434
FHA domain containing protein; PFAM: Forkhead-associated; KEGG: sco:SCO1384 hypothetical protein.
 
 
 
 0.932
Rxyl_0024
PFAM: protein phosphatase 2C-like; KEGG: ade:Adeh_3691 serine/threonine phosphatase.
 
 0.885
Rxyl_0026
PFAM: Forkhead-associated; KEGG: tfu:Tfu_3060 FHA domain protein.
 
 
 
 0.740
Rxyl_0025
FHA domain containing protein; PFAM: Forkhead-associated; KEGG: fra:Francci3_4431 FHA domain containing protein.
 
 
 
 0.733
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
 
 
 0.516
Rxyl_0495
PFAM: alpha/beta hydrolase fold; KEGG: cya:CYA_1156 hydrolase, alpha/beta fold family.
  
    0.501
Rxyl_0494
PFAM: aldo/keto reductase; KEGG: syn:slr0545 auxin-induced protein.
       0.499
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
 
 
 0.492
Rxyl_0560
Protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis; KEGG: fra:Francci3_3472 protein-tyrosine kinase.
    
 
 0.431
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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