STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0689PFAM: glycosyl transferase, group 1; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein. (398 aa)    
Predicted Functional Partners:
Rxyl_0688
PFAM: Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ade:Adeh_1535 inositol-3-phosphate synthase.
     
 0.779
Rxyl_0690
PFAM: glycosyl transferase, group 1; KEGG: mma:MM0650 mannosyltransferase.
 
    
0.700
Rxyl_0571
PFAM: sugar transferase; KEGG: noc:Noc_1508 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.592
Rxyl_1236
PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: noc:Noc_1516 NAD-dependent epimerase/dehydratase.
 
    0.583
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.557
Rxyl_0318
Malto-oligosyltrehalose trehalohydrolase; KEGG: tbd:Tbd_1173 alpha amylase, catalytic subdomain; TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain.
   
 0.553
Rxyl_2440
PFAM: peptidase S15; KEGG: bur:Bcep18194_B2670 alpha/beta hydrolase.
   
 
 0.499
egtB
Protein of unknown function DUF323; Catalyzes the oxidative sulfurization of hercynine (N- alpha,N-alpha,N-alpha-trimethyl-L-histidine) into hercynyl-gamma-L- glutamyl-L-cysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine; Belongs to the EgtB family.
     
 0.493
Rxyl_3120
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.482
Rxyl_0685
KEGG: sco:SCO0913 hypothetical protein.
  
  
 0.476
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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