STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0729PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase. (464 aa)    
Predicted Functional Partners:
Rxyl_1434
FHA domain containing protein; PFAM: Forkhead-associated; KEGG: sco:SCO1384 hypothetical protein.
 
 
 
 0.932
Rxyl_0024
PFAM: protein phosphatase 2C-like; KEGG: ade:Adeh_3691 serine/threonine phosphatase.
 
 0.873
Rxyl_0025
FHA domain containing protein; PFAM: Forkhead-associated; KEGG: fra:Francci3_4431 FHA domain containing protein.
 
 
 
 0.740
Rxyl_0026
PFAM: Forkhead-associated; KEGG: tfu:Tfu_3060 FHA domain protein.
 
 
 
 0.722
Rxyl_0730
PFAM: protein kinase tyrosine protein kinase; SMART: Serine/threonine protein kinase; KEGG: sth:STH1353 serine/threonine protein kinase.
 
    
0.708
Rxyl_0731
PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: sth:STH417 serine proteinase.
       0.690
Rxyl_0732
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: gka:GK1356 cold shock protein.
       0.689
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.689
Rxyl_0727
PFAM: Chorismate mutase; KEGG: ttj:TTHA0388 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase.
       0.529
Rxyl_0728
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: mta:Moth_1335 phospho-2-dehydro-3-deoxyheptonate aldolase.
       0.529
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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