STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rxyl_0948PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0206 Periplasmic sugar-binding proteins. (311 aa)    
Predicted Functional Partners:
Rxyl_0947
PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 0.995
rbsA1
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.983
Rxyl_3002
PFAM: inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 0.977
Rxyl_1889
PFAM: inner-membrane translocator; KEGG: mlo:mll1013 permease protein of sugar ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 0.973
Rxyl_2602
PFAM: inner-membrane translocator; KEGG: mlo:mll3405 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.973
Rxyl_0395
PFAM: inner-membrane translocator; KEGG: atc:AGR_L_989 sugar ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 0.971
Rxyl_0396
PFAM: inner-membrane translocator; KEGG: atc:AGR_L_991 sugar transport system permease protein homolog.
 0.971
rbsD1
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.971
Rxyl_1268
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: mag:amb3438 sensor protein GacS.
 
 
 0.952
Rxyl_2663
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like Hpt PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif; KEGG: cyb:CYB_1640 sensory box histidine kinase/response regulator.
  
 
 0.952
Your Current Organism:
Rubrobacter xylanophilus
NCBI taxonomy Id: 266117
Other names: R. xylanophilus DSM 9941, Rubrobacter xylanophilus DSM 9941, Rubrobacter xylanophilus str. DSM 9941, Rubrobacter xylanophilus strain DSM 9941
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